Publications

Peer-Reviewed Journals

  1. Yuto Kudo, Fumitoshi Kumaki, Masanari Nagasaka, Jun-ichi Adachi, Yoshifumi Noguchi, Nobuaki Koga, Hideyuki Itabashi, Miyabi Hiyama*, "Experimental and theoretical study for core excitation of Firefly luciferin" J. Phys. Chem. A, 128, 611-617 (2024) https://doi.org/10.1021/acs.jpca.3c07504
  2. Tamotsu Uchiyama, Taiji Nakamura, Miyabi Hiyama, Takako Kudo, "Theoretical study of the Si/C equally-mixed dodecahedrane analogues" Molecules 28(6), 2769 (2023) https://doi.org/10.3390/molecules28062769
  3. Ryohei Ono, Keita Osawa, Yutaka Takahashi, Yoshifumi Noguchi, Nobuo Kitada, Ryohei Saito-Moriya, Takashi Hirano, Shojiro A. Maki, Keisei Shibata, Hidefumi Akiyama, Ken-ichiro Kanno, Hideyuki Itabashi, Miyabi Hiyama "Quantum Yield of Near-Infrared Bioluminescence with Firefly Luciferin Analog: AkaLumine" Journal of Photochemistry & Photobiology, A: Chemistry 434, 114270 (2023) https://doi.org/10.1016/j.jphotochem.2022.114270
  4. Ryo Kumagai, Ryohei Ono, Shu Sakimoto, Chiharu Suzuki, Ken-ichiro Kanno, Hiroshi Aoyama, Junko Usukura, Masataka Kobayashi, Hidefumi Akiyama, Hideyuki Itabashi, Miyabi Hiyama, "Photo-cleaving and photo-bleaching quantum yields of coumarin-caged luciferin" Journal of Photochemistry & Photobiology, A: Chemistry 434, 114230 (2023) https://doi.org/10.1016/j.jphotochem.2022.114230
  5. Ryo Kumagai, Ryohei Ono, Hidefumi Akiyama, Hideyuki Itabashi, Miyabi Hiyama: Photo-bleaching of Firefly Luciferin with UV Irradiation Chem. Phys. Lett.791, 139414 (2022) https://doi.org/10.1016/j.cplett.2022.139414
  6. Akihiko Uchiyama, Chisako Fujiwara, Yuta Inoue, Miyabi Hiyama, Hideyuki Itabashi, Sei-ichiro Motegi: The effect of balneotherapy with natural mineral dissolved water on dry skin in atopic dermatitis: A phage IIa, non-randomized, controlled study Journal of Cutaneous Immunology and Allergy, 4, 159-165 (2021) https://doi.orgi/10.1002/cia2.12195
  7. Haruhisa Ogawa, Ryohei Ono, Yoshifumi Noguchi, Nobuo Kitada, Ryohei Saito-Moriya, Shojiro A. Maki, Hidefumi Akiyama, Hideyuki Itabashi, Miyabi Hiyama: Absorption Spectra for Firefly Bioluminescence Substrate Analog: TokeOni in Various pH Solutions Photochem. Photobiol. 97, 1016-1022 (2021) https://doi.org/10.1111/php.13458
  8. Masaru Chiyomaru, Keiro Higuchi, Miyabi Hiyama, Hideyuki Itabashi: Automated Continuous Monitoring FIA System for Silicate and Its Application to Plant Water Quality Control Journal of Flow Injection Analysis Vol. 37, No. 2, 67 - 72 (2020)
  9. Yoshifumi Noguchi, Miyabi Hiyama, Motoyuki Shiga, Hidefumi Akiyama, Osamu Sugino: Quantum-Mechanical Hydration Plays Critical Role in the Stability of Firefly Oxyluciferin Isomers: State-of-the-art Calculations of the Excited States J. Chem. Phys. 153,201103 (2020)
  10. Di Gao, Konomi Omi, Nobuhiko Wada, Masanobu Mori, Miyabi Hiyama, Hideyuki Itabashi: All Injection Analysis to Determine Heavy Metal Speciation in Accumulated Soil in Japan J. Flow Injection Anal. Vol. 37, No. 2, 61 - 65 (2020)
  11. Junko Usukura, Miyabi Hiyama, Maki Kurata, Yuji Hazama, Xingping Qiu, Francoise M. Winnik, Hidefumi Akiyamaa, Nobuaki Koga: Theoretical study of the wavelength selection for the photocleavage of coumarin-caged D-luciferin Photochem. Photobiol., 96, 805-814(2020)
  12. Yoshifumi Noguchi, Miyabi Hiyama, Motoyuki Shiga, Hidefumi Akiyama, Osamu Sugino: Photoabsorption Spectra of Aqueous Oxyluciferin Anions Elucidated by Explicit Quantum Solvent Journal of Chemical Theory and Computation, 15, 5474-5482 (2019)
  13. Maki Kurata, Miyabi Hiyama, Takuma Narimatsu, Yuji Hazama, Takashi Ito, Yuhei Hayamizu, Xingping Qiu, Francoise M. Winnik, Hidehumi Akiyama: Synthesis and quantitative characterization of coumarin caged D-luciferin J. Photochem. Photobiol. B, 189, 81-86 (2018)
  14. Miyabi. Hiyama, Motoyuki Shiga, Nobuaki Koga, Osamu Sugino, Hidefumi Akiyama, Yoshifumi Noguchi: Effect of dynamical fluctuations of hydration structures on the absorption spectra of oxyluciferin anions in aqueous solution Phys. Chem. Chem. Phys., 19, 10028-10035 (2017)
  15. Miyabi Hiyama, Hidefumi Akiyama, Nobuaki Koga: Theoretical insights into the effect of pH values on oxidation processes in the emission of firefly luciferin in aqueous solution Luminescence: The Journal of Biological and Chemical Luminescence, 32, 1100-1108 (2017)
  16. Yoshifumi Noguchi, Miyabi Hiyama, Motoyuki Shiga, Osamu Sugino, Hidefumi Akiyama: Reverse Stability of Oxyluciferin Isomers in Aqueous Solutions J. Phys. Chem. B, 120, 8776-8783 (2016)
  17. Miyabi Hiyama, Yoshifumi Noguchi, Hidefumi Akiyama, Kenta Yamada, Nobuaki Koga: Vibronic structures in absorption and fluorescence spectra of firefly oxyluciferin in aqueous solutions Photochem. Photobiol., 91, 819-827 (2015)
  18. Yoshifumi Noguchi, Miyabi Hiyama, Hidefumi Akiyama, Yoshihisa Harada, Nobuaki Koga: First-Principles Investigation of Strong Excitonic Effects in Oxygen 1s X-Ray Absorption Spectra J. Chem. Theo. Compt. 11, 1668-1673 (2015)
  19. Miyabi Hiyama, T. Mochizuki, Hidefumi Akiyama, Nobuaki Koga: Analysis of Oxyluciferin Photoluminescence Pathways in Aqueous Solutions Photochem. Photobiol., 91,74-83 (2015)
  20. Yoshifumi Noguchi, Miyabi Hiyama, Hidefumi Akiyama, Nobuaki Koga: First-Principles Investigation on Rydberg excitations of Firefly Luciferin Anion in Vacuum. J. Chem. Phys. 141, 044309 (2014)
  21. Toshimitsu Mochizuki, Yu Wang, Miyabi Hiyama, Hidefumi Akiyama: Temperature-Sensitive Quantum Yields and Quantitative Spectra of Firefly Bioluminescence. Appl. Phys. Lett. 104, 213704 (2014)
  22. Miyabi Hiyama, Hidefumi Akiyama, Toshimitsu Mochizuki, Kenta Yamada, Nobuaki Koga: Analysis of Photoexcitation Energy Dependence in the Photo Luminescence of Firefly Luciferin. Photochem. Photobiol.,90, 820-828 (2014)
  23. Miyabi Hiyama, Hidefumi Akiyama, K. Yamada, Nobuaki Koga: Theoretical Study of Fluorescence Spectra Utilizing the pKa Values of Acids in Their Excited States. Photochem. Photobiol., 90,35-44 (2014)
  24. Miyabi Hiyama, Kenta Yamada, Toshimitsu Mochizuki, Hidefumi Akiyama, Nobuaki Koga: Theoretical study of pH dependence on photoluminescence of firefly luciferin. Luminescence 29, 70 (2014)
  25. Hidefumi Akiyama, Y. Wang, Miyabi Hiyama, Toshimitsu Mochizuki, Kanako Terakado, Toru Nakatsu: How can quantitative bioluminescence and in-situ fluorescence of firefly oxyluciferin in luciferase be compared with theoretical calculations? Luminescence 29, 7 - 8 (2014)
  26. Yoshifumi Noguchi, Miyabi Hiyama, Hidefumi Akiyama, Nobuaki Koga: First-Principles Investigation on Optical Properties of Firefly Luciferin Anion. Luminescence 29, 86 - 87 (2014)
  27. Yasuhiro Kajima, Shuji Ogata, Ryo Kobayashi, Miyabi Hiyama, Tomoyuki Tamura, Fluctuation Local Recrystallization of Quati-Luquid Layer of Sub-micrometer- scaled Ice: A Molecular Dynamics Study. J. Phys. Soc. Japan, 83, 083601-1 - 083601-4 (2014)
  28. Miyabi Hiyama, Hidefumi Akiyama, Yu Wang, Nobuaki Koga: Theoretical Study of Oxyuciferin pKa Values; Relative Absorption Intensity in Aqueous Solutions. Chem. Phys. Lett., 577, 121-126 (2013)
  29. Miyabi Hiyama, Hidefumi Akiyama, Kenta Yamada, Nobuaki Koga: Theoretical Study of Firefly Luciferin pKa Values - Relative Absorption Intensity in Aqueous Solutions. Photochem. Photobiol., 89,571-578 (2013)
  30. Yasuhiro Kajima, Miyabi Hiyama, Shuji Ogata, Tomoyuki Tamura, Ryo Kobayashi: Fast Time-Reversible Molecular Dynamics Algorithm for Rigid-Body Systems. J. Chem. Phys. 136, 234105-1-234105-8 (2013)
  31. Miyabi Hiyama, Hidefumi Akiyama, Kenta Yamada, Nobuaki Koga: Theoretical Study of Absorption and Fluorescence Spectra of Firefly Luciferin. Photochem. Photobiol., 88,889-898 (2012)
  32. Miyabi Hiyama, Nobuaki Koga: Theoretical study of electron transfer in Rhodobacter sphaeroides reaction center. Photochem. Photobiol., 87, 1297-1307 (2011)
  33. Yasuhiro Kajima, Miyabi Hiyama, Shuji Ogata, T. Tamura: Exactly Time-Reversible Molecular Dynamics Algorithm for Rigid-Body Systems, J. Phys. Soc. Japan, 80, 114002-1 - 114002-7 (2011)
  34. Miyabi Hiyama, Tomoyuki Kinjo, Shiaki Hyodo: Angular Momentum Form of Verlet Algorithm for Rigid Molecules, J. Phys Soc. Japan, 77, 064001-1 - 064001-12 (2008)
  35. Mark S. Child, Miyabi Hiyama: On the Choice of basis functions to eliminate false roots of the quantization condition in quantum defect theory, J. Phys., B40, 1233-1244 (2007)
  36. Miyabi Hiyama, Nobuhiro Kosugi: Application of R matrix / MQDT method to valence and core excitations in NO, J. Phys. B39, 1797-1811 (2006)
  37. Miyabi Hiyama, Nubohiro Kosugi: Ab initio R-Matrix/Multi-channel quantum defect theory applied to molecular core excitation and ionization, J. Electron Spectroscopy and Related Phenomena, 144-147, 1223-1226 (2005)
  38. Suomi Masuda, Tatsuo Gejo, Miyabi Hiyama, Nobuhiro Kosugi: Vibronic couplings in the C 1s-Rydberg and valence excitations of C2H2, revealed by angle-resolved photoion yield spectroscopy, J. Electron Spectroscopy and Related Phenomena, 144-147, 215-218 (2005)
  39. Miyabi Hiyama, Nobuhiro Kosugi: Ab initio R-Matrix/Multi-channel Quantum Defect Theory Approach to Study Molecular Core Excitation and Ionization: GSCF4R, J. Theoretical and Computational Chemistry, 4, 35-47 (2005)
  40. Miyabi Hiyama, Nobuhiro Kosugi: Ab initio R-Matrix/MQDT method for near-edge x-ray absorption fine structure, Physica. Scripta, T115, 136-139 (2005)
  41. Miyabi Hiyama, Mark S. Child: Ab initio R-matrix/ MQDT study of nitric oxide II. Analysis of valence/ Rydberg interactions, J. Phys., B36 4547-4559 (2003)
  42. Miyabi Hiyama, Kiyohiko Someda: Photoelectron spectra in intense laser fields: The effect of resonance with autoionizing Rydberg states, Physical Review, A68, 043402-1 ? 043402-8 (2003)
  43. Miyabi Hiyama, Mark S. Child: Ab initio R-matrix/ multichannel quantum defect theory study of nitric oxide, J. Phys. B35, 1337-1351 (2002)
  44. Miyabi Hiyama, Mark S. Child: Computation of negative energy Coulomb functions, J. Phys., B34, 3935-3950 (2001)
  45. Miyabi Hiyama, Kiyohiko Someda: Stabilization of diatomic molecules against ionization in intense laser fields: Effects of overlapping resonance, Physical Review, A61, 023411-1-023411-8 (2000)
  46. Miyabi Hiyama, Kiyohiko Someda: Ionization of atoms in intense laser fields. Strong mixing of auto- and photoionizations, Chem. Phys. Lett., 287, 613-619 (1998)
  47. Miyabi Hiyama, Nobohiro Kosugi, Hiroki Nakamura: Characteristics and dynamics of superexcited states of diatomic molecules: General theoretical procedure, J. Chem. Phys. 107,9379-9381 (1997)
  48. Miyabi Hiyama, Hiroki Nakamura: Two-center Coulomb functions, Comp. Phys. Comm., 103, 209 - 216 (1997)
  49. Miyabi Hiyama, Hiroki Nakamura: Gaussian expansions of the two-center Coulomb functions, Comp. Phys. Comm., 103, 197-208 (1997)
  50. Miyabi Hiyama, Hiroki Nakamura: Superexcited states of CO near the first ionization threshold, Chem. Phys. Lett., 248, 316-320 (1996)
  51. Miyabi Hiyama, Suehiro Iwata: Theoretical assignment of the vibronic bands in the photoelectron spectra of N2 below 30 eV, Chem. Phys. Lett., 211, 319-327 (1993)
  52. Miyabi Hiyama, Suehiro Iwata: Assignment of the photoelectron spectrum of HCl above 20 eV, Chem. Phys. Lett., 210, 187-192 (1993)
  53. Miyabi Hiyama, Sinkoh Nanbu, Suehiro Iwata: The excimer emission spectra and the interaction potential energy of the ground and excited states of He and alkali metal systems, Chem. Phys. Lett. 192, 443-450 (1992)

Review

  1. L. Pichl, M. Hiyama, H. Nakamura: Analytical Treatment of the K matrix Integral Equation in the Dynamics of Superexcited Molecules, Dissociative Recombination of Molecular Ions with Electrons, (edited by S. L. Guberman, Kluwer Academic/Plenum Publishers) 167-176 (2003)
  2. M. Hiyama, H. Nakamura: Characteristics and Dynamics of Superexcited States of Diatomic Molecules, Structure and Dynamics of Electronic Excited States, (edited by J. Laane, H. Takahashi, A. Bandrauk, Springer-Verlag) 296-317 (1998)
  3. M. Hiyama, H. Nakamura: Characteristics and Dynamics of Superexcited States of CO, Dissociative Recombination: Theory, Experiment and Applications III, (edited by D. Zaifman, J. B. A. Mitchell, D. Schwalm, and B. R. Rowe, World Scientific), 212-215 (1995)